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Oferta de Trabajo  Código: 41641  

Puesto: PhD and Postdoctoral positions on deep learning applied to biomolecular simulations

Función: We are looking to recruit 3 PhD candidates or postdoctoral scientists to work on next generation. These positions involve having a molecular simulations and neural network potentials with the goal of substantially improve molecular mechanics applications.
Empresa: Computational Science Laboratory - Universitat Pompeu Fabra Nº de Plazas: 3
Referencia: PDPHD2021MD Publicada el 2/11/2021 Publicada hasta el 30/11/2021
Tipo de Contrato: Contrato temporal Dedicación: Jornada completa  
Localidad: Barcelona Provincia: Barcelona Disponibilidad para viajar: Sin especificar
Fecha de Incorporación: antes de final de 2021 Fecha de Finalización: 3-4 años
Enlace URL: www.compscience.org/assets/jobs/PDPHD2021MD.pdf

Nivel Académico
Doctor  
Master  

Titulación Académica
Biología (Titulación Universitaria)

Áreas tecnológicas
A-031 Bioinformática
L- Física
P-07 Informática
T-03 Química Computacional

Idiomas
Idioma: Inglés Nivel Lectura: Alto Nivel Escrito: Alto Nivel Conversación: Alto

Conocimientos de Informática  
- machine learning
- PyTorch
- CUDA
-C++
- very good coding skills

Otros

These positions involve having a key role in the development of OpenMM (http://openmm.org).

The candidate will contribute together with other PhDs fellows and international collaborators from academia and industry to the research lines of the Computational Science Laboratory (https://www.compscience.org/).

Relevant publications:TorchMD: A deep learning framework for molecular simulations, S Doerr, M Majewski, A Pérez, A Krämer, C Clementi, F Noe, T Giorgino, … Journal of chemical theory and computation 17 (4), 2355-2363 (https://github.com/torchmd)

What you will do: Depending on your skillset, you are expected to contribute to the machine learning of neural network representations for molecular potentials, improve speed in collaboration with OpenMM and Nvidia, enhance capabilities in terms of representing longer range physical terms, charges, etc

What you need. The candidate will have a profile in physics, chemistry, computer science, or similar. We seek exceptional candidates with a passion for computing. Very good communication skills in English. A solid previous experience in ANY of the following:

● molecular simulations and quantum chemistry

● machine learning and PyTorch

● CUDA, C++ and very good coding skills

● Depending on the position an excellent publication record is positively evaluated

Location. The laboratory is located in the Barcelona Biomedical Research Park (PRBB) which, with a privileged location on the shoreline of the Mediterranean sea, constitutes one of the most exciting interdisciplinary research centres in Southern Europe with more than 1000 scientists in the building alone. The PRBB is more than just a research institution, it is a unique creative space that connects science and diversity. By becoming a member of its research community, the candidate will have access to conferences, networking opportunities and training events.

Facilities. Access to state of the art computational resources and large amounts of simulation data, which will be crucial for the development and validation of novel computational protocols. The lab is equipped with a cluster with state-of-the-art GPUs and has exclusive access to GPUGRID.net, a distributed computing project with 5000 GPUs.

Eligibility: Please send an email to gianni.defabritiis@upf.edu with subject “PDPHD2021MD” with a CV and a cover letter together with the names of up to three contacts for references. We will contact you only if you are selected for a presentation.

Salary. We offer a competitive salary, depending on experience.

Duration. For the postdoctoral position this is a potentially long term (up to 5 years). For the PhD is a 3 to 4 years position

Start date: Anytime from now